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Ivan Prates, Ph.D.
CODE
You can find R and Unix shell scripts that I wrote for data analyses in my GitHub page,
here
.
I provide code for my most recent projects. I plan to add code used in older manuscripts progressively.
I list my public GitHub repositories and their content below.
1. Prates
et al
. 2018 - Ecology and Evolution
This
repository contains the following information:
R and Unix shell scripts used to prepare and filter the data and perform all analyses.
R code used to define prior ranges for the parameters of SNAPP and G-PhoCS analyses.
R code used to make plots of population genetic structure from SNMF results.
Genetic and environmental data used in all analyses.
Configuration files used in Ipyrad, SNAPP (.xml) and G-PhoCS (.ctl) analyses.
Results from analyses performed in R using the LEA package (LFMM, SNMF, PCA).
Data used to make maps shown in Fig. 1 of the manuscript.
Ivan Prates
ivanprates [at] gmail [dot] com
© 2018 All Rights Reserved